Table of Contents

CHAPTER 1 PubChem Sketcher User Manual

Example:

Editor Window Layout

Button Area

Mouse Use

Error Reporting

Bandwidth Control

Element Buttons

Bond Drawing

Special Bond Types

Atomic Charges

Fragments

Templates

Graphical Manipulations

Deleting Objects

Undoing, Redoing, and Starting Fresh

Cleaning up Structures

Setting Query Attributes on Atoms

Display of Atom Query Attributes

Setting Bond Query Attributes

Display of Bond Query Attributes

The Structure Data Line

Structure Input via the Structure Data Line

Structure Import via Keyboard Paste

Structure Import via File Upload

Structure Export

Hydrogen Manipulation

Keyboard Shortcuts

Data Transfer to Caller Forms

Quitting the Sketcher

CHAPTER 2 Installation of a Sketcher Web Service

Theory of Operation

Operation as Stand-Alone Process

Operation as FCGI Process

Storage of Structure Information

Preparing for Installation

Configurable Template Directories

Selecting a Script Interpreter

Configuring the Installation

Performing an Installation

Cleanup

CHAPTER 3 Linking the Sketcher to Web Pages

General Introduction

General Integration Method

Pre-loading Sketcher Content

Receiving Sketcher Data

Document Domain Issues