Package name: (2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-[(2R,3S,4R,5R,6R)-4,5,6-trihydroxy-2-(hydroxymethyl)oxan-3-yl]oxyoxane-3,4,5-triol

Package ID: 1013
Force-field: OPLS-AA | Code: Gromacs
Created by Bogdan Iorga (biorga)
Created at 2016-09-03 23:06:18
Modified at 2016-09-03 23:06:18

Abstract

The topology was generated using MOL2FF.

Chemical structure

General view

Detailed view

References

No citations associated with these parameters.

Reference validation values

These are experimental values or high-level quantum mechanics values, which will be used for comparison with computed values (found in individual versions).

Files and history

All deposited versions are available and can be downloaded individually. Higher version numbers are more recent. Files that changed between versions can be identified by differing SHA1 hash checksums.

Version 1 created at 2016-09-03

Score 1/5 "These parameters are not validated yet"

Computed validation values

grompp
preprocessor output "grompp-compatible"
Created at 2016-09-03 23:06:18 | Modified at 2016-10-29 11:59:46 | [download zip]
Type Description Hash (SHA1)
Topology CBI.itp b86c905cd7e73c75aca810baa853b10f53469f01
Structure CBI.pdb a543a6a91dbd338bd35d9aaee9ce76d625c06425

Compound details

Ligand code CBI
Molecule identifier CDD347ED32B151CD
Displayed name (2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-[(2R,3S,4R,5R,6R)-4,5,6-trihydroxy-2-(hydroxymethyl)oxan-3-yl]oxyoxane-3,4,5-triol
Canonical IUPAC name (2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-[(2R,3S,4R,5R,6R)-2-(hydroxymethyl)-4,5,6-tris(oxidanyl)oxan-3-yl]oxy-oxane-3,4,5-triol
Formula C12H22O11
Molecular weight 342.30
Charge 0
Number of atoms 45
SMILES O2[C@@H](O[C@H]1[C@H](O)[C@H]([C@H](O)O[C@@H]1CO)O)[C@H](O)[C@@H](O)[C@H](O)[C@H]2CO
PubChem CID 10712
CAS RN 23315-16-4
Other names (2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-[(2R,3S,4R,5R,6R)-4,5,6-trihydroxy-2-(hydroxymethyl)oxan-3-yl]oxyoxane-3,4,5-triol • (2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-[(2R,3S,4R,5R,6R)-4,5,6-trihydroxy-2-(hydroxymethyl)tetrahydropyran-3-yl]oxy-tetrahydropyran-3,4,5-triol • (2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-[[(2R,3S,4R,5R,6R)-4,5,6-trihydroxy-2-(hydroxymethyl)-3-tetrahydropyranyl]oxy]tetrahydropyran-3,4,5-triol • (2R,3S,4S,5R,6S)-2-methylol-6-[(2R,3S,4R,5R,6R)-4,5,6-trihydroxy-2-methylol-tetrahydropyran-3-yl]oxy-tetrahydropyran-3,4,5-triol • (2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-[(2R,3S,4R,5R,6R)-4,5,6-trihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy-oxane-3,4,5-triol • 23315-16-4 • beta-D-Glc-(1->4)-D-Glc • ZINC04097113 • Cbi • 6-(hydroxymethyl)-5-[3,4,5-trihydroxy-6-(hydroxymethyl) tetrahydropyran-2-yl]oxy-tetrahydropyran-2,3,4-triol • Cellobiose (8CI) • D-Glucose, 4-O-beta-D-glucopyranosyl- (6CI,9CI) • beta-D-Glc-(1-4)-D-Glc • beta-D-glucopyranose, 4-O-beta-D-glucopyranosyl- • 4-O-beta-D-glucopyranosyl-beta-D-glucopyranose • C7252_SIGMA • beta-D-glucopyranosyl-(1->4)-beta-D-glucopyranose • 4-(beta-D-Glucosido)-D-glucose • 4-O-beta-D-Glucopyranosyl-D-glucose • AI3-18877 • Cellose • D-(+)-Cellobiose • D-Cellobiose • D-Glucose, 4-O-beta-D-glucopyranosyl- • D-Glucosyl-beta-(1-4)-D-glucose • EINECS 208-436-5 • 1-beta-D-Glucopyranosyl-4-beta-D-glucopyranose • C06422 • beta-Cellobiose • BGC-(1-4)BGC • D-Glucopyranose, 4-O-beta-D-glucopyranosyl- • CHEBI:36217 • BGC-(4-1)BGC • 22150_FLUKA • D-()-Cellobiose

License

Type CC BY-SA – Creative Commons Attribution-Share Alike License
Name Bogdan I. Iorga
Email (hidden)
Source MOL2FF (http://mol2ff.icsn.cnrs-gif.fr)