Package name: 1,2,3,7-tetrachlorooxanthrene

Package ID: 111
Force-field: OPLS-AA | Code: Gromacs
Created by Bogdan Iorga (biorga)
Created at 2016-09-03 23:03:16
Modified at 2016-09-03 23:03:16

Abstract

The topology was generated using MOL2FF v0.111, using the original OPLS-AA force field parameters, which corresponds to the protocol P1 from Beckstein et al. (J Comput Aided Mol Des, 2012, 26, 635-645).

Chemical structure
General view

 Detailed view

References
Authors: Beckstein O, Iorga BI
Title: Prediction of hydration free energies for aliphatic and aromatic chloro derivatives using molecular dynamics simulations with the OPLS-AA force field.
Journal: J Comput Aided Mol Des
Year: 2012 May
Volume: 26
Pages: 635-45
DOI: 10.1007/s10822-011-9527-9
Pubmed ID:   22187140
Comments:

Reference validation values

These are experimental values or high-level quantum mechanics values, which will be used for comparison with computed values (found in individual versions).

Files and history

All deposited versions are available and can be downloaded individually. Higher version numbers are more recent. Files that changed between versions can be identified by differing SHA1 hash checksums.

Version 1 created at 2016-09-03

Score 1/5 "These parameters are not validated yet"

Computed validation values

grompp
preprocessor output "grompp-compatible"
Created at 2016-09-03 23:03:17 | Modified at 2016-09-03 23:03:17 | [download zip]
Type Description Hash (SHA1)
Topology xfer3-332.itp 991fcebece6e7bcd448e86850c3da5874e2c5745
Structure xfer3-332.pdb ae14cd80cb0fe617e3cad73928d3f95231df5e32

Compound details
Ligand code UNL
Molecule identifier AD730513979DEE8D
Displayed name 1,2,3,7-tetrachlorooxanthrene
Canonical IUPAC name 1,2,3,7-tetrakis(chloranyl)dibenzo-p-dioxin
Formula C12H4Cl4O2
Molecular weight 321.97
Charge 0
Number of atoms 22
SMILES C3(=CC1=C(OC2=C(O1)C=C(C(=C2Cl)Cl)Cl)C=C3)Cl
PubChem CID 48889
CAS RN 67028-18-6
Other names 1,2,3,7-tetrachlorooxanthrene • 67028-18-6 • 1,2,3,7-TETRACHLORODIBENZODIOXIN • 1,2,3,7-Tetrachlorodibenzo-p-dioxin • Dibenzo(b,e)(1,4)dioxin, 1,2,3,7-tetrachloro- • Dibenzo-p-dioxin, 1,2,3,7-tetrachloro • 1,2,3,7-tetrachloro dibenzo-p-dioxin

License
Type CC BY-SA – Creative Commons Attribution-Share Alike License
Name Bogdan I. Iorga
Email (hidden)
Source MOL2FF (http://mol2ff.icsn.cnrs-gif.fr)

Ligandbook is described in

Jan Domański, Oliver Beckstein, Bogdan I. Iorga; Ligandbook: an online repository for small and drug-like molecule force field parameters, Bioinformatics, Volume 33, Issue 11, 1 June 2017, Pages 1747–1749, https://doi.org/10.1093/bioinformatics/btx037

Actions
Documentation
Support

"Meet Me At the Coffee Shop" (Red Hot Chili Peppers)