Package name: (4R)-4-[(3R,5R,8R,9S,10S,12S,13R,14S,17R)-3,12-dihydroxy-10,13-dimethyl-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl]pentanoic acid

Package ID: 1192
Force-field: OPLS-AA | Code: Gromacs
Created by Bogdan Iorga (biorga)
Created at 2016-09-03 23:06:42
Modified at 2016-09-03 23:06:42

Abstract

The topology was generated using MOL2FF.

Chemical structure

General view

Detailed view

References

No citations associated with these parameters.

Reference validation values

These are experimental values or high-level quantum mechanics values, which will be used for comparison with computed values (found in individual versions).

Files and history

All deposited versions are available and can be downloaded individually. Higher version numbers are more recent. Files that changed between versions can be identified by differing SHA1 hash checksums.

Version 1 created at 2016-09-03

Score 1/5 "These parameters are not validated yet"

Computed validation values

grompp
preprocessor output "grompp-compatible"
Created at 2016-09-03 23:06:42 | Modified at 2016-10-29 11:59:46 | [download zip]
Type Description Hash (SHA1)
Topology DHO-neutral.itp 0fbb2f80122948de45206ada4c8eb3ed0f982210
Structure DHO-neutral.pdb 56fe1137ff52192f4cdfd53c3bfa5812d19a7033

Compound details

Ligand code DHO
Molecule identifier 6D87FD852D9BFC74
Displayed name (4R)-4-[(3R,5R,8R,9S,10S,12S,13R,14S,17R)-3,12-dihydroxy-10,13-dimethyl-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl]pentanoic acid
Canonical IUPAC name (4R)-4-[(3R,5R,8R,9S,10S,12S,13R,14S,17R)-10,13-dimethyl-3,12-bis(oxidanyl)-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl]pentanoic acid
Formula C24H40O4
Molecular weight 392.58
Charge 0
Number of atoms 68
SMILES C(=O)(O)CC[C@@H](C)[C@H]3CC[C@H]4[C@@H]2CC[C@@H]1C[C@H](O)CC[C@]1(C)[C@H]2C[C@H](O)[C@]34C
PubChem CID 222528
CAS RN 83-44-3
Other names (4R)-4-[(3R,5R,8R,9S,10S,12S,13R,14S,17R)-3,12-dihydroxy-10,13-dimethyl-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl]pentanoic acid • (4R)-4-[(3R,5R,8R,9S,10S,12S,13R,14S,17R)-3,12-dihydroxy-10,13-dimethyl-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl]valeric acid • 115349-14-9 • 83-44-3 • 3-Hydroxy-polydeoxycholic acid • 3alpha-Hydroxy-polydeoxycholate • Cholan-24-oic acid, 3,12-dihydroxy-, (3alpha,5beta,12alpha)-, homopolymer • (3ALPHA,5ALPHA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID • 17.beta.-(1-Methyl-3-carboxypropyl)-etiocholane-3.alpha.,12.alpha.-diol • 3,12-Dihydroxycholanic acid • 3.alpha.,12.alpha.-Dihydroxy-5.beta.-cholan-24-oic acid • 3.alpha.,12.alpha.-Dihydroxy-5.beta.-cholanic acid • 3.alpha.,12.alpha.-Dihydroxy-5.beta.-cholanoic acid • 3.alpha.,12.alpha.-Dihydroxycholanic acid • 5.beta.-Cholan-24-oic acid, 3.alpha.,12.alpha.-dihydroxy- • 7.alpha.-Deoxycholic acid • Cholan-24-oic acid, 3,12-dihydroxy-, (3.alpha.,5.beta.,12.alpha.)- • Choleic acid • Cholerebic • Cholic acid, deoxy- • Cholorebic • Degalol • Deoxycholatic acid • Desoxycholic acid • Droxolan • NSC8797 • Pyrochol • Septochol • D4297_SIGMA • Cholan-24-oic acid, 3,12-dihydroxy-, (3-alpha,5-beta,12-alpha)- • ST5307159 • AIDS045142 • CHEBI:28834 • Desoxycholsaeure • NCI60_041946 • LMST04010040 • MLS001066423 • SMR000112166 • 30960_FLUKA • 7-Deoxycholic acid • 7alpha-Deoxycholic acid • 3alpha,12alpha-Dihydroxy-5beta-cholanic acid • Deoxycholic acid • AIDS-045142 • Spectrum5_002007 • 3alpha,12alpha-Dihydroxy-5beta-cholan-24-oic acid • DXC • Cholan-24-oic acid, 3,12-dihydroxy-, (3-.alpha., 5-.beta.,12-.alpha.)- • D2510_SIGMA • (3alpha,5beta,12alpha)-3,12-Dihydroxycholan-24-oic acid

License

Type CC BY-SA – Creative Commons Attribution-Share Alike License
Name Bogdan I. Iorga
Email (hidden)
Source MOL2FF (http://mol2ff.icsn.cnrs-gif.fr)