Package name: (2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-[(2R,3S,4R,5R,6S)-4,5,6-trihydroxy-2-(hydroxymethyl)oxan-3-yl]oxyoxane-3,4,5-triol

Package ID: 1859
Force-field: OPLS-AA | Code: Gromacs
Created by Bogdan Iorga (biorga)
Created at 2016-09-03 23:08:14
Modified at 2016-09-03 23:08:14

Abstract

The topology was generated using MOL2FF.

Chemical structure

General view

Detailed view

References

No citations associated with these parameters.

Reference validation values

These are experimental values or high-level quantum mechanics values, which will be used for comparison with computed values (found in individual versions).

Files and history

All deposited versions are available and can be downloaded individually. Higher version numbers are more recent. Files that changed between versions can be identified by differing SHA1 hash checksums.

Version 1 created at 2016-09-03

Score 1/5 "These parameters are not validated yet"

Computed validation values

grompp
preprocessor output "grompp-compatible"
Created at 2016-09-03 23:08:14 | Modified at 2016-10-29 12:07:07 | [download zip]
Type Description Hash (SHA1)
Topology MAL.itp 794cfacf7d988bdfcdaeb7b474f0f1573d6af992
Structure MAL.pdb d8fcaf5045a625e8a8e75893c17804988e61de83

Compound details

Ligand code MAL
Molecule identifier 6645F9D0A576DC27
Displayed name (2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-[(2R,3S,4R,5R,6S)-4,5,6-trihydroxy-2-(hydroxymethyl)oxan-3-yl]oxyoxane-3,4,5-triol
Canonical IUPAC name (2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-[(2R,3S,4R,5R,6S)-2-(hydroxymethyl)-4,5,6-tris(oxidanyl)oxan-3-yl]oxy-oxane-3,4,5-triol
Formula C12H22O11
Molecular weight 342.30
Charge 0
Number of atoms 45
SMILES O2[C@H](O[C@H]1[C@H](O)[C@H]([C@H](O[C@@H]1CO)O)O)[C@H](O)[C@@H](O)[C@H](O)[C@H]2CO
PubChem CID 439341
CAS RN
Other names (2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-[(2R,3S,4R,5R,6S)-4,5,6-trihydroxy-2-(hydroxymethyl)oxan-3-yl]oxyoxane-3,4,5-triol • (2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-[(2R,3S,4R,5R,6S)-4,5,6-trihydroxy-2-(hydroxymethyl)tetrahydropyran-3-yl]oxy-tetrahydropyran-3,4,5-triol • (2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-[[(2R,3S,4R,5R,6S)-4,5,6-trihydroxy-2-(hydroxymethyl)-3-tetrahydropyranyl]oxy]tetrahydropyran-3,4,5-triol • (2R,3S,4S,5R,6R)-2-methylol-6-[(2R,3S,4R,5R,6S)-4,5,6-trihydroxy-2-methylol-tetrahydropyran-3-yl]oxy-tetrahydropyran-3,4,5-triol • (2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-[(2R,3S,4R,5R,6S)-4,5,6-trihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy-oxane-3,4,5-triol • 9005-84-9 • 4482-75-1 • S2004_SIAL • Starch from potato • 33615_RIEDEL • S5296_SIAL • Starch solution • S2760_SIAL • S5127_SIAL • C00897 • alpha-Malt sugar • alpha-Maltose • Starch, soluble • 319554_ALDRICH • Starch indicator, 1% (w/w) aqueous solution, mercury iodide perservative • 34117_RIEDEL • 85642_FLUKA • S4180_SIAL • Starch potato • 03967_FLUKA • 85652_FLUKA • Starch • Amylodextrin • EINECS 232-686-4 • 18727_RIEDEL • ZINC04095490 • 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranose • GLC-(4-1)GLC • C01911 • Disaccharide • CHEBI:18167 • S9765_SIAL • S7260_SIAL • Starch from rice • Corn starch • S5651_SIAL • S2388_SIAL • Starch from corn • 85655_FLUKA • S9679_SIAL • GLC-(1-4)GLC • S4251_SIAL • S4126_SIAL • S1514_SIAL • Starch from wheat • S1520_SIAL • S2630_SIAL • alpha-D-Glcp-(1->4)-alpha-D-Glcp • alpha-D-glucopyranosyl-(1->4)-alpha-D-glucopyranose • Starch from maize

License

Type CC BY-SA – Creative Commons Attribution-Share Alike License
Name Bogdan I. Iorga
Email (hidden)
Source MOL2FF (http://mol2ff.icsn.cnrs-gif.fr)