Package name: (2r)-3-{[(s)-hydroxy{[(1r,2r,3r,4r,5s,6r)-2,3,5,6-tetrahydroxy-4-(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate

Package ID: 2215
Force-field: OPLS-AA | Code: Gromacs
Created by Bogdan Iorga (biorga)
Created at 2016-09-03 23:09:03
Modified at 2016-09-03 23:09:03

Abstract

The topology was generated using MOL2FF.

Chemical structure

General view

Detailed view

References

No citations associated with these parameters.

Reference validation values

These are experimental values or high-level quantum mechanics values, which will be used for comparison with computed values (found in individual versions).

Files and history

All deposited versions are available and can be downloaded individually. Higher version numbers are more recent. Files that changed between versions can be identified by differing SHA1 hash checksums.

Version 1 created at 2016-09-03

Score 1/5 "These parameters are not validated yet"

Computed validation values

grompp
preprocessor output "grompp-compatible"
Created at 2016-09-03 23:09:03 | Modified at 2016-10-29 12:09:10 | [download zip]
Type Description Hash (SHA1)
Topology PIF-ion-1.itp fc715ad6f612a2de15157a3d02c51646c06dac6b
Structure PIF-ion-1.pdb 7bedbe53cb76dc89e61f11f4cc5eadbafdd49427

Compound details

Ligand code PIF
Molecule identifier 8FB7D577FE5A12D6
Displayed name (2r)-3-{[(s)-hydroxy{[(1r,2r,3r,4r,5s,6r)-2,3,5,6-tetrahydroxy-4-(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate
Canonical IUPAC name
Formula C25H45O16P2
Molecular weight 663.57
Charge -3
Number of atoms 88
SMILES [C@@H]1(O[P]([O-])(=O)[O-])[C@@H](O)[C@H]([C@@H](O[P](OC[C@@H](COC(=O)CCCCCCC)OC(=O)CCCCCCC)([O-])=O)[C@H](O)[C@H]1O)O
PubChem CID
CAS RN
Other names

License

Type CC BY-SA – Creative Commons Attribution-Share Alike License
Name Bogdan I. Iorga
Email (hidden)
Source MOL2FF (http://mol2ff.icsn.cnrs-gif.fr)