Package name: [(1R,2S,3R,4R,5S,6R)-3-[[(2R)-2,3-di(octanoyloxy)propoxy]-oxidanidyl-phosphoryl]oxy-2,4,5-tris(oxidanyl)-6-phosphonatooxy-cyclohexyl] phosphate

Package ID: 2218
Force-field: OPLS-AA | Code: Gromacs
Created by Bogdan Iorga (biorga)
Created at 2016-09-03 23:09:03
Modified at 2016-09-03 23:09:03

Abstract

The topology was generated using MOL2FF.

Chemical structure

General view

Detailed view

References

No citations associated with these parameters.

Reference validation values

These are experimental values or high-level quantum mechanics values, which will be used for comparison with computed values (found in individual versions).

Files and history

All deposited versions are available and can be downloaded individually. Higher version numbers are more recent. Files that changed between versions can be identified by differing SHA1 hash checksums.

Version 1 created at 2016-09-03

Score 1/5 "These parameters are not validated yet"

Computed validation values

grompp
preprocessor output "grompp-compatible"
Created at 2016-09-03 23:09:04 | Modified at 2016-10-29 12:09:10 | [download zip]
Type Description Hash (SHA1)
Topology PIO-ion-1.itp a3ccaaede58a63370dd01cc6c5959e77fe924d2a
Structure PIO-ion-1.pdb 2c421abbc4052c0397ab74408d03d2e07002a303

Compound details

Ligand code PIO
Molecule identifier 9CF15C20F7EDD1EE
Displayed name [(1R,2S,3R,4R,5S,6R)-3-[[(2R)-2,3-di(octanoyloxy)propoxy]-oxidanidyl-phosphoryl]oxy-2,4,5-tris(oxidanyl)-6-phosphonatooxy-cyclohexyl] phosphate
Canonical IUPAC name [(1R,2S,3R,4R,5S,6R)-3-[[(2R)-2,3-di(octanoyloxy)propoxy]-oxidanidyl-phosphoryl]oxy-2,4,5-tris(oxidanyl)-6-phosphonatooxy-cyclohexyl] phosphate
Formula C25H44O19P3
Molecular weight 741.53
Charge -5
Number of atoms 91
SMILES [C@@H]1(O[P](=O)([O-])[O-])[C@@H](O)[C@H]([C@@H](O[P](OC[C@@H](COC(=O)CCCCCCC)OC(=O)CCCCCCC)(=O)[O-])[C@@H]([C@H]1O[P](=O)([O-])[O-])O)O
PubChem CID 86290069
CAS RN
Other names

License

Type CC BY-SA – Creative Commons Attribution-Share Alike License
Name Bogdan I. Iorga
Email (hidden)
Source MOL2FF (http://mol2ff.icsn.cnrs-gif.fr)