Package name: 4,6-dideoxy-4-{[(1s,2r,3r,4s,5s)-2,3,4-trihydroxy-5-(hydroxymethyl)cyclohexyl]amino}-alpha-d-allopyranosyl-(1->4)-alpha-d-glucopyranosyl-(1->4)-alpha-d-glucopyranosyl-(1->4)-alpha-d-glucopyranose

Package ID: 2516
Force-field: OPLS-AA | Code: Gromacs
Created by Bogdan Iorga (biorga)
Created at 2016-09-03 23:09:48
Modified at 2016-09-03 23:09:48

Abstract

The topology was generated using MOL2FF.

Chemical structure

General view

Detailed view

References

No citations associated with these parameters.

Reference validation values

These are experimental values or high-level quantum mechanics values, which will be used for comparison with computed values (found in individual versions).

Files and history

All deposited versions are available and can be downloaded individually. Higher version numbers are more recent. Files that changed between versions can be identified by differing SHA1 hash checksums.

Version 1 created at 2016-09-03

Score 1/5 "These parameters are not validated yet"

Computed validation values

grompp
preprocessor output "grompp-compatible"
Created at 2016-09-03 23:09:48 | Modified at 2016-10-29 12:09:11 | [download zip]
Type Description Hash (SHA1)
Topology TXT-ion-1.itp c1a046d5f52d7ba6b884bc2324b3e5eadd174d4d
Structure TXT-ion-1.pdb 424e8818d6a205de4566b26fcc0d4a8deb479195

Compound details

Ligand code TXT
Molecule identifier 25347B7033A2F645
Displayed name 4,6-dideoxy-4-{[(1s,2r,3r,4s,5s)-2,3,4-trihydroxy-5-(hydroxymethyl)cyclohexyl]amino}-alpha-d-allopyranosyl-(1->4)-alpha-d-glucopyranosyl-(1->4)-alpha-d-glucopyranosyl-(1->4)-alpha-d-glucopyranose
Canonical IUPAC name
Formula C31H56NO23
Molecular weight 810.78
Charge 1
Number of atoms 111
SMILES [C@H]5([NH2+][C@H]1C[C@@H](CO)[C@H](O)[C@@H](O)[C@@H]1O)[C@@H](O)[C@H]([C@@H](O[C@H]2[C@H](O)[C@H]([C@H](O[C@@H]2CO)O[C@H]3[C@H](O)[C@H]([C@H](O[C@@H]3CO)O[C@H]4[C@H](O)[C@H]([C@H](O[C@@H]4CO)O)O)O)O)O[C@@H]5C)O
PubChem CID
CAS RN
Other names

License

Type CC BY-SA – Creative Commons Attribution-Share Alike License
Name Bogdan I. Iorga
Email (hidden)
Source MOL2FF (http://mol2ff.icsn.cnrs-gif.fr)