Package name: (1R,3R)-5-[(2E)-2-[(3aS,7aS)-1-[(1S)-1-(2-ethyl-2-oxidanyl-butyl)sulfanylethyl]-7a-methyl-3a,5,6,7-tetrahydro-3H-inden-4-ylidene]ethylidene]-2-(2-hydroxyethyloxy)cyclohexane-1,3-diol

Package ID: 2562
Force-field: OPLS-AA | Code: Gromacs
Created by Bogdan Iorga (biorga)
Created at 2016-09-03 23:09:56
Modified at 2016-09-03 23:09:56

Abstract

The topology was generated using MOL2FF.

Chemical structure

General view

Detailed view

References

No citations associated with these parameters.

Reference validation values

These are experimental values or high-level quantum mechanics values, which will be used for comparison with computed values (found in individual versions).

Files and history

All deposited versions are available and can be downloaded individually. Higher version numbers are more recent. Files that changed between versions can be identified by differing SHA1 hash checksums.

Version 1 created at 2016-09-03

Score 1/5 "These parameters are not validated yet"

Computed validation values

grompp
preprocessor output "grompp-compatible"
Created at 2016-09-03 23:09:56 | Modified at 2016-10-29 12:09:11 | [download zip]
Type Description Hash (SHA1)
Topology VDA-ion-1.itp fd65a1ff9e158369d59fd728654127b7a321f03d
Structure VDA-ion-1.pdb 593ab9e115e1289a6bb9048c4e0ccc233cb82f2f

Compound details

Ligand code UNL
Molecule identifier 0660B140F5542583
Displayed name (1R,3R)-5-[(2E)-2-[(3aS,7aS)-1-[(1S)-1-(2-ethyl-2-oxidanyl-butyl)sulfanylethyl]-7a-methyl-3a,5,6,7-tetrahydro-3H-inden-4-ylidene]ethylidene]-2-(2-hydroxyethyloxy)cyclohexane-1,3-diol
Canonical IUPAC name (1R,3R)-5-[(2E)-2-[(3aS,7aS)-1-[(1S)-1-(2-ethyl-2-oxidanyl-butyl)sulfanylethyl]-7a-methyl-3a,5,6,7-tetrahydro-3H-inden-4-ylidene]ethylidene]-2-(2-hydroxyethyloxy)cyclohexane-1,3-diol
Formula C28H46O5S
Molecular weight 494.73
Charge 0
Number of atoms 80
SMILES S([C@H](C2=CC[C@H]3C(=C/[CH]=[C@]1C[C@@H](O)[CH]([C@H](O)C1)OCCO)/CCC[C@]23C)C)CC(O)(CC)CC
PubChem CID 44561361
CAS RN
Other names

License

Type CC BY-SA – Creative Commons Attribution-Share Alike License
Name Bogdan I. Iorga
Email (hidden)
Source MOL2FF (http://mol2ff.icsn.cnrs-gif.fr)