| Package ID: 928 | |
| Force-field: OPLS-AA | Code: Gromacs | |
| Created by | Bogdan Iorga (biorga) |
| Created at | 2016-09-03 23:06:07 |
| Modified at | 2016-09-03 23:06:07 |
Abstract | |
| The topology was generated using MOL2FF. | |
Chemical structure |
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General view |
Detailed view
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References |
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No citations associated with these parameters. | |
These are experimental values or high-level quantum mechanics values, which will be used for comparison with computed values (found in individual versions).
All deposited versions are available and can be downloaded individually. Higher version numbers are more recent. Files that changed between versions can be identified by differing SHA1 hash checksums.
Score 1/5 "These parameters are not validated yet"
Computed validation values
| Type | Description | Hash (SHA1) |
|---|---|---|
| Topology | BNZ.itp | 28be89c1d156a75e38915f29d8553b844c0c4d7b |
| Structure | BNZ.pdb | 2877b35e97024f98b5ce9e95df682651aa63104e |
Compound details |
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| Ligand code | BNZ |
| Molecule identifier | 3DB0124A3ECF5ECE |
| Displayed name | BENZENE |
| Canonical IUPAC name | benzene |
| Formula | C6H6 |
| Molecular weight | 78.11 |
| Charge | 0 |
| Number of atoms | 12 |
| SMILES | C1=CC=CC=C1 |
| PubChem CID | 241 |
| CAS RN | 71-43-2 |
| Other names | BENZENE • 27271-55-2 • 68956-52-5 • 26181-88-4 • 174973-66-1 • 54682-86-9 • 71-43-2 • NCGC00090744-02 • UN1114 • Benzen [Polish] • Benzene + aniline combo • 270709_ALDRICH • 311855_SIGMA • Benzene (including benzene from gasoline) • 676985_ALDRICH • Benzene [UN1114] [Flammable liquid] • 154628_SIAL • Benzene, labeled with carbon-14 and tritium • benzol • benzole • 322644_SIGMA • Benzin (Obs.) • InChI=1/C6H6/c1-2-4-6-5-3-1/h1-6 • 12540_FLUKA • Benzine (Obs.) • NCGC00163890-02 • Benzol 90 • Benzene-U-14C • NCGC00090744-01 • Benzene-UL-14C • 401765_ALDRICH • Benzol diluent • 12552_FLUKA • Benzolo [Italian] • RNG • 12553_FLUKA • 319953_SIAL • ST5214351 • CHEBI:16716 • NCGC00163890-01 • ghl.PD_Mitscher_leg0.503 • Benzene, pure • BNZ • c0142 • Hydrocarbons, C4-8 • Benzeen • Benzen • Benzin • Benzine • Benzolene • Benzolo • Bicarburet of hydrogen • Carbon oil • Coal naphtha • Cyclohexatriene • Fenzen • Mineral naphtha • Motor benzol • NCI-C55276 • NSC67315 • Nitration benzene • Phenyl hydride • Pyrobenzol • Pyrobenzole • WLN: RH • [6]Annulene • CCRIS 70 • Caswell No. 077 • EINECS 200-753-7 • EPA Pesticide Chemical Code 008801 • Fenzen [Czech] • HSDB 35 • NSC 67315 • Phene • Aromatic alkane • RCRA waste no. U109 • RCRA waste number U019 • UN 1114 • Polystream • C01407 • (6)Annulene • 32212_RIEDEL • Benzene, labeled with carbon-14 • 48503_SUPELCO • AI3-00808 • Benzeen [Dutch] |
License |
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| Type | CC BY-SA – Creative Commons Attribution-Share Alike License | |
| Name | Bogdan I. Iorga | |
| (hidden) | ||
| Source | MOL2FF (http://mol2ff.icsn.cnrs-gif.fr) |
Jan Domański, Oliver Beckstein, Bogdan I. Iorga; Ligandbook: an online repository for small and drug-like molecule force field parameters, Bioinformatics, Volume 33, Issue 11, 1 June 2017, Pages 1747–1749, https://doi.org/10.1093/bioinformatics/btx037
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