Package name: 5-[(3aR,6S,6aS)-2-oxo-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-6-yl]pentanoate

Package ID: 956
Force-field: OPLS-AA | Code: Gromacs
Created by Bogdan Iorga (biorga)
Created at 2016-09-03 23:06:10
Modified at 2016-09-03 23:06:10

Abstract

The topology was generated using MOL2FF.

Chemical structure

General view

Detailed view

References

No citations associated with these parameters.

Reference validation values

These are experimental values or high-level quantum mechanics values, which will be used for comparison with computed values (found in individual versions).

Files and history

All deposited versions are available and can be downloaded individually. Higher version numbers are more recent. Files that changed between versions can be identified by differing SHA1 hash checksums.

Version 1 created at 2016-09-03

Score 1/5 "These parameters are not validated yet"

Computed validation values

grompp
preprocessor output "grompp-compatible"
Created at 2016-09-03 23:06:10 | Modified at 2016-09-03 23:06:10 | [download zip]
Type Description Hash (SHA1)
Topology BTN-ion-1.itp 1c9fca755b72416053ee26bb914eb515b4906a90
Structure BTN-ion-1.pdb 65c88d2a1235e7025e31cab665c0903b1db35784

Compound details

Ligand code BTN
Molecule identifier 14D47CBFC5684C7D
Displayed name 5-[(3aR,6S,6aS)-2-oxo-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-6-yl]pentanoate
Canonical IUPAC name 5-[(3aS,4S,6aR)-2-oxidanylidene-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]pentanoate
Formula C10H15N2O3S
Molecular weight 243.30
Charge -1
Number of atoms 31
SMILES S1[C@@H](CCCCC([O-])=O)[C@@H]2[C@H](C1)NC(=O)N2
PubChem CID 6560210
CAS RN 58-85-5
Other names 5-[(3aR,6S,6aS)-2-oxo-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-6-yl]pentanoate • 5-[(3aR,6S,6aS)-2-keto-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-6-yl]valerate • ZINC03830316

License

Type CC BY-SA – Creative Commons Attribution-Share Alike License
Name Bogdan I. Iorga
Email (hidden)
Source MOL2FF (http://mol2ff.icsn.cnrs-gif.fr)